Variant report

Variant	rs7726729
Chromosome Location	chr5:154307794-154307795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154297619..154302417-chr5:154303443..154308380,7	K562	blood:
2	chr5:154235684..154238517-chr5:154305409..154308879,3	MCF-7	breast:
3	chr5:154276032..154278866-chr5:154306482..154309276,2	K562	blood:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11167700	0.85[YRI][hapmap]
rs12519840	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17116670	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs2278223	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2644742	0.92[ASN][1000 genomes]
rs62382244	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7726729	LARP1	cis	cerebellum	SCAN
rs7726729	C5orf40	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
3	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
4	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
8	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:154268800-154312800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:154275400-154313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:154276200-154314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:154279400-154312200	Strong transcription	Liver	Liver
27	chr5:154280200-154311400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:154283200-154316600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr5:154286000-154312000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:154290800-154311800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:154291600-154316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:154292600-154316200	Weak transcription	Fetal Heart	heart
33	chr5:154293800-154312200	Strong transcription	Dnd41	blood
34	chr5:154294000-154315400	Strong transcription	Adipose Nuclei	Adipose
35	chr5:154294000-154315800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:154294200-154314800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr5:154294400-154315200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:154294800-154312400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr5:154295000-154311800	Strong transcription	Placenta	Placenta
40	chr5:154295000-154312200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr5:154295000-154312600	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr5:154296000-154311800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr5:154297400-154308200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:154297400-154312200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr5:154300200-154313200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:154301200-154312400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:154301800-154312200	Strong transcription	Brain Anterior Caudate	brain
48	chr5:154301800-154314200	Strong transcription	Fetal Stomach	stomach
49	chr5:154302400-154309400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr5:154302400-154310200	Strong transcription	ES-I3 Cell Line	embryonic stem cell

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