The 2.0 version of rSNPBase

Variant report

Variant rs2644742
Chromosome Location chr5:154293762-154293763
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154262800-154300800 Strong transcription Fetal Brain Female brain
2 chr5:154264000-154312800 Strong transcription Fetal Adrenal Gland Adrenal Gland
3 chr5:154266200-154312200 Strong transcription Fetal Thymus thymus
4 chr5:154266200-154316600 Weak transcription Stomach Mucosa stomach
5 chr5:154266400-154311200 Strong transcription Primary monocytes fromperipheralblood blood
6 chr5:154266400-154312800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
7 chr5:154266400-154315600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr5:154266600-154294600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr5:154266600-154312800 Strong transcription Fetal Intestine Large intestine
10 chr5:154266600-154313200 Strong transcription Primary T regulatory cells fromperipheralblood blood
11 chr5:154266600-154313600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr5:154267000-154294400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
13 chr5:154267000-154304400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr5:154267000-154312800 Strong transcription Primary T cells fromperipheralblood blood
15 chr5:154267200-154311800 Strong transcription Primary B cells from peripheral blood blood
16 chr5:154267200-154312800 Strong transcription H1 Cell Line embryonic stem cell
17 chr5:154267400-154299000 Strong transcription Fetal Stomach stomach
18 chr5:154267600-154300000 Strong transcription Fetal Muscle Leg muscle
19 chr5:154267600-154301600 Strong transcription iPS-20b Cell Line embryonic stem cell
20 chr5:154267600-154313200 Strong transcription Duodenum Mucosa Duodenum
21 chr5:154267800-154315600 Strong transcription Primary T helper cells fromperipheralblood blood
22 chr5:154268000-154296600 Weak transcription Right Atrium heart
23 chr5:154268000-154315600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr5:154268200-154300200 Strong transcription Duodenum Smooth Muscle Duodenum
25 chr5:154268200-154315000 Strong transcription HUES6 Cell Line embryonic stem cell
26 chr5:154268200-154315600 Strong transcription Primary hematopoietic stem cells short term culture blood
27 chr5:154268200-154316200 Strong transcription HUES64 Cell Line embryonic stem cell
28 chr5:154268800-154312800 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr5:154269800-154313600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr5:154269800-154315400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr5:154269800-154316200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
32 chr5:154273600-154316600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
33 chr5:154275000-154300800 Strong transcription Primary B cells from cord blood blood
34 chr5:154275400-154313400 Strong transcription HUES48 Cell Line embryonic stem cell
35 chr5:154276200-154314600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr5:154279000-154304400 Strong transcription Fetal Muscle Trunk muscle
37 chr5:154279400-154312200 Strong transcription Liver Liver
38 chr5:154280200-154299600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr5:154280200-154311400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr5:154283200-154316600 Weak transcription ES-WA7 Cell Line embryonic stem cell
41 chr5:154283600-154301600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr5:154283800-154294000 Strong transcription Fetal Intestine Small intestine
43 chr5:154283800-154299000 Strong transcription Lung lung
44 chr5:154284400-154296000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
45 chr5:154284600-154297800 Strong transcription Fetal Lung lung
46 chr5:154284600-154305400 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr5:154286000-154304000 Strong transcription Rectal Mucosa Donor 29 rectum
48 chr5:154286000-154312000 Strong transcription Skeletal Muscle Female skeletal muscle
49 chr5:154288200-154299800 Strong transcription Brain Germinal Matrix brain
50 chr5:154289000-154295000 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015