Variant report

Variant	rs348735
Chromosome Location	chr5:154296795-154296796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154295902..154298462-chr5:154319101..154321938,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082515	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10515726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167702	0.82[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.80[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes]
rs11740589	0.83[GIH][hapmap];0.82[YRI][hapmap]
rs17562321	0.86[ASN][1000 genomes]
rs17641488	1.00[CHB][hapmap]
rs2644742	0.90[AFR][1000 genomes]
rs286596	0.81[GIH][hapmap]
rs348741	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853757	0.82[YRI][hapmap]
rs3867430	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap]
rs593637	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7328	0.85[GIH][hapmap]
rs903837	0.85[GIH][hapmap];0.82[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs348735	LARP1	cis	cerebellum	SCAN
rs348735	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
4	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
5	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
9	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
16	chr5:154267600-154300000	Strong transcription	Fetal Muscle Leg	muscle
17	chr5:154267600-154301600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:154268200-154300200	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:154268800-154312800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:154275000-154300800	Strong transcription	Primary B cells from cord blood	blood
31	chr5:154275400-154313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:154276200-154314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:154279000-154304400	Strong transcription	Fetal Muscle Trunk	muscle
34	chr5:154279400-154312200	Strong transcription	Liver	Liver
35	chr5:154280200-154299600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:154280200-154311400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:154283200-154316600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:154283600-154301600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr5:154283800-154299000	Strong transcription	Lung	lung
40	chr5:154284600-154297800	Strong transcription	Fetal Lung	lung
41	chr5:154284600-154305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr5:154286000-154304000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr5:154286000-154312000	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr5:154288200-154299800	Strong transcription	Brain Germinal Matrix	brain
45	chr5:154290000-154301000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:154290600-154299800	Strong transcription	GM12878-XiMat	blood
47	chr5:154290800-154311800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:154291000-154299000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:154291200-154303200	Weak transcription	Colonic Mucosa	Colon
50	chr5:154291400-154302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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