Variant report

Variant	rs7328
Chromosome Location	chr5:154267288-154267289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154266685..154268761-chr5:154287106..154289231,2	MCF-7	breast:
2	chr13:78802047..78802741-chr5:154267140..154267972,2	MCF-7	breast:
3	chr5:154236554..154241107-chr5:154261832..154268242,6	MCF-7	breast:
4	chr5:154236608..154239552-chr5:154265475..154268217,2	K562	blood:
5	chr5:154266347..154268784-chr5:154316063..154317850,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction
ENSG00000082516	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11740031	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740589	0.88[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes]
rs11743080	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158133	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286595	0.96[CEU][hapmap];0.92[GIH][hapmap];0.89[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286596	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286622	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348735	0.85[GIH][hapmap]
rs3853757	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3867429	1.00[CHD][hapmap]
rs62382248	1.00[ASN][1000 genomes]
rs6877876	1.00[ASN][1000 genomes]
rs903837	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7328	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
2	chr5:154262000-154268400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:154262000-154268800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr5:154262800-154268000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
6	chr5:154263800-154267600	ZNF genes & repeats	Primary B cells from cord blood	blood
7	chr5:154263800-154268200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:154264000-154267600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr5:154264000-154267600	ZNF genes & repeats	Fetal Muscle Leg	muscle
10	chr5:154264000-154268200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr5:154264000-154268200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr5:154264000-154268400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:154264000-154268600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr5:154264000-154272200	Strong transcription	HSMM	muscle
15	chr5:154264000-154276600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:154264200-154267600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr5:154264200-154267800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
19	chr5:154264200-154268000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:154264200-154268200	Strong transcription	Fetal Brain Male	brain
21	chr5:154264200-154269600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:154264200-154275600	Strong transcription	Brain Anterior Caudate	brain
23	chr5:154264400-154267600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr5:154264400-154268200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:154264400-154274200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:154264600-154268000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr5:154264600-154268200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
28	chr5:154264800-154267600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
29	chr5:154264800-154267600	ZNF genes & repeats	Liver	Liver
30	chr5:154264800-154272200	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr5:154265000-154267800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
32	chr5:154265000-154271800	Strong transcription	Brain Angular Gyrus	brain
33	chr5:154265200-154276400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:154265200-154278000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr5:154265200-154279800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr5:154265400-154268200	Strong transcription	Right Ventricle	heart
37	chr5:154265800-154274200	Strong transcription	Fetal Kidney	kidney
38	chr5:154266000-154268200	ZNF genes & repeats	Ovary	ovary
39	chr5:154266000-154268400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:154266000-154272000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:154266000-154274000	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr5:154266000-154275800	Strong transcription	Brain Cingulate Gyrus	brain
43	chr5:154266200-154267400	Weak transcription	Esophagus	oesophagus
44	chr5:154266200-154267400	Weak transcription	Gastric	stomach
45	chr5:154266200-154267800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:154266200-154268200	Strong transcription	Psoas Muscle	Psoas
47	chr5:154266200-154271600	Strong transcription	Small Intestine	intestine
48	chr5:154266200-154272000	Strong transcription	Colonic Mucosa	Colon
49	chr5:154266200-154272000	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr5:154266200-154272400	Strong transcription	Hela-S3	cervix

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