Variant report

Variant	rs286622
Chromosome Location	chr5:154366234-154366235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11740031	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740589	0.84[ASW][hapmap];0.80[CEU][hapmap];0.89[GIH][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap]
rs11743080	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs158133	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286595	0.92[ASW][hapmap];0.96[CEU][hapmap];0.94[GIH][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.91[TSI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286596	0.96[CEU][hapmap];0.97[GIH][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853757	0.91[CEU][hapmap]
rs62382248	1.00[ASN][1000 genomes]
rs6877876	1.00[ASN][1000 genomes]
rs7328	0.92[CEU][hapmap];0.92[GIH][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903837	0.92[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs286622	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:154365000-154372400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:154366200-154367200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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