Variant report

Variant	rs6877876
Chromosome Location	chr5:154379841-154379842
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11740031	1.00[ASN][1000 genomes]
rs11743080	1.00[ASN][1000 genomes]
rs158133	1.00[ASN][1000 genomes]
rs286595	1.00[ASN][1000 genomes]
rs286596	1.00[ASN][1000 genomes]
rs286622	1.00[ASN][1000 genomes]
rs59199274	0.80[AFR][1000 genomes]
rs62382194	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62382248	1.00[ASN][1000 genomes]
rs72799513	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7328	1.00[ASN][1000 genomes]
rs903837	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv968117	chr5:154371654-154381973	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154375600-154380400	Weak transcription	HepG2	liver
2	chr5:154377800-154381200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:154377800-154381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:154377800-154381800	Weak transcription	HMEC	breast
5	chr5:154377800-154381800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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