Variant report

Variant	rs59199274
Chromosome Location	chr5:154365260-154365261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2560040	0.86[EUR][1000 genomes]
rs56187116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62382194	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6877876	0.80[AFR][1000 genomes]
rs72799513	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs59199274	PRELP	trans	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:154364800-154365400	Enhancers	Brain Germinal Matrix	brain
3	chr5:154365000-154372400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:154365200-154366200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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