Variant report

Variant	rs56187116
Chromosome Location	chr5:154312909-154312910
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154178549..154181135-chr5:154311775..154314598,2	K562	blood:
2	chr5:154307865..154310770-chr5:154311622..154314495,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2560040	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59199274	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62382194	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72799513	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56187116	PRELP	trans	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
2	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
6	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:154275400-154313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:154276200-154314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:154283200-154316600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:154291600-154316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:154292600-154316200	Weak transcription	Fetal Heart	heart
20	chr5:154294000-154315400	Strong transcription	Adipose Nuclei	Adipose
21	chr5:154294000-154315800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:154294200-154314800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr5:154294400-154315200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:154300200-154313200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:154301800-154314200	Strong transcription	Fetal Stomach	stomach
26	chr5:154302600-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:154302800-154313400	Strong transcription	K562	blood
28	chr5:154303000-154313400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:154304000-154316400	Weak transcription	Small Intestine	intestine
30	chr5:154304200-154316200	Weak transcription	NHLF	lung
31	chr5:154305200-154313000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:154305200-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:154305800-154317000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr5:154306400-154316200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:154306600-154313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:154306800-154316600	Weak transcription	Pancreas	Pancrea
37	chr5:154307000-154316200	Weak transcription	NHDF-Ad	bronchial
38	chr5:154307200-154316600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr5:154307200-154316600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr5:154307400-154316400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr5:154307400-154316600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:154307400-154316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:154307400-154316600	Weak transcription	Esophagus	oesophagus
44	chr5:154307400-154316600	Weak transcription	Gastric	stomach
45	chr5:154307600-154313600	Weak transcription	Fetal Intestine Small	intestine
46	chr5:154307600-154314400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr5:154308400-154315600	Weak transcription	Fetal Brain Male	brain
48	chr5:154309400-154316200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr5:154310000-154316600	Weak transcription	Thymus	Thymus
50	chr5:154310200-154314200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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