Variant report

Variant	rs62382248
Chromosome Location	chr5:154384291-154384292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11740031	1.00[ASN][1000 genomes]
rs11743080	1.00[ASN][1000 genomes]
rs158133	1.00[ASN][1000 genomes]
rs286595	1.00[ASN][1000 genomes]
rs286596	1.00[ASN][1000 genomes]
rs286622	1.00[ASN][1000 genomes]
rs6877876	1.00[ASN][1000 genomes]
rs7328	1.00[ASN][1000 genomes]
rs903837	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883058	chr5:154375465-154432580	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154381400-154386400	Weak transcription	HepG2	liver
2	chr5:154383800-154384600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links