Variant report

Variant	rs11743080
Chromosome Location	chr5:154285768-154285769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154236704..154238798-chr5:154285568..154287487,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11740031	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740589	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs158133	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286595	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286596	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286622	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853757	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62382248	1.00[ASN][1000 genomes]
rs6877876	1.00[ASN][1000 genomes]
rs7328	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs903837	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11743080	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:154266200-154287600	Strong transcription	HepG2	liver
4	chr5:154266200-154288800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
6	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
7	chr5:154266400-154293600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:154266600-154292600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:154266600-154292800	Strong transcription	Left Ventricle	heart
13	chr5:154266600-154293000	Strong transcription	Dnd41	blood
14	chr5:154266600-154293200	Strong transcription	Placenta	Placenta
15	chr5:154266600-154294600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
17	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:154266800-154293000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:154266800-154293600	Strong transcription	Stomach Smooth Muscle	stomach
21	chr5:154267000-154293600	Strong transcription	Primary T cells from cord blood	blood
22	chr5:154267000-154294400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr5:154267200-154287400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:154267200-154293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
30	chr5:154267600-154300000	Strong transcription	Fetal Muscle Leg	muscle
31	chr5:154267600-154301600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr5:154268000-154296600	Weak transcription	Right Atrium	heart
35	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:154268200-154300200	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr5:154268800-154312800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:154269600-154293200	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr5:154269800-154292200	Weak transcription	Fetal Heart	heart
43	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:154274600-154289600	Strong transcription	NH-A	brain
48	chr5:154275000-154293000	Strong transcription	Osteobl	bone
49	chr5:154275000-154300800	Strong transcription	Primary B cells from cord blood	blood
50	chr5:154275400-154287200	Strong transcription	HMEC	breast

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