Variant report

Variant	rs10515726
Chromosome Location	chr5:154282551-154282552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11167702	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap]
rs11740589	0.86[YRI][hapmap]
rs17562321	0.86[ASN][1000 genomes]
rs17641488	1.00[CHB][hapmap]
rs348735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348741	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853757	0.87[YRI][hapmap]
rs3867430	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs55734017	0.84[AMR][1000 genomes]
rs593637	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6886571	0.82[AMR][1000 genomes]
rs903837	0.86[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10515726	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:154266200-154285000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:154266200-154287600	Strong transcription	HepG2	liver
5	chr5:154266200-154288800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
7	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
8	chr5:154266400-154293600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:154266600-154282800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:154266600-154283600	Strong transcription	K562	blood
14	chr5:154266600-154284200	Strong transcription	Brain Germinal Matrix	brain
15	chr5:154266600-154285000	Strong transcription	Thymus	Thymus
16	chr5:154266600-154292600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:154266600-154292800	Strong transcription	Left Ventricle	heart
18	chr5:154266600-154293000	Strong transcription	Dnd41	blood
19	chr5:154266600-154293200	Strong transcription	Placenta	Placenta
20	chr5:154266600-154294600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
22	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:154266800-154285200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr5:154266800-154293000	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:154266800-154293600	Strong transcription	Stomach Smooth Muscle	stomach
27	chr5:154267000-154293600	Strong transcription	Primary T cells from cord blood	blood
28	chr5:154267000-154294400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr5:154267200-154287400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:154267200-154293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
34	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
36	chr5:154267600-154300000	Strong transcription	Fetal Muscle Leg	muscle
37	chr5:154267600-154301600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr5:154268000-154282800	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:154268000-154283800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr5:154268000-154296600	Weak transcription	Right Atrium	heart
43	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:154268200-154284800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr5:154268200-154300200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr5:154268800-154312800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr5:154269000-154283400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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