Variant report

Variant	rs593637
Chromosome Location	chr5:154333144-154333145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10515726	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11167702	1.00[CHB][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs17641488	1.00[CHB][hapmap]
rs286595	0.82[YRI][hapmap]
rs348735	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs348741	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3867430	0.80[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs593637	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321200-154337400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:154321200-154338000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154321400-154336400	Weak transcription	Placenta	Placenta
4	chr5:154321400-154338000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:154321400-154338200	Weak transcription	Lung	lung
6	chr5:154321400-154338600	Weak transcription	Gastric	stomach
7	chr5:154321400-154338800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:154321400-154339000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
10	chr5:154321600-154336000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr5:154321600-154336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:154321600-154337400	Weak transcription	Fetal Intestine Small	intestine
13	chr5:154321600-154337400	Weak transcription	Ovary	ovary
14	chr5:154321600-154338000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:154321600-154338200	Weak transcription	Aorta	Aorta
16	chr5:154321600-154338800	Weak transcription	Fetal Kidney	kidney
17	chr5:154321600-154340000	Weak transcription	HSMMtube	muscle
18	chr5:154321600-154343400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:154321600-154345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:154321800-154336200	Weak transcription	NH-A	brain
21	chr5:154321800-154336400	Weak transcription	Fetal Thymus	thymus
22	chr5:154321800-154338600	Weak transcription	Fetal Muscle Leg	muscle
23	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
24	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
25	chr5:154322200-154336600	Weak transcription	Osteobl	bone
26	chr5:154322200-154338800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:154322400-154335200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:154322400-154335800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:154322400-154336200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:154322400-154336200	Weak transcription	Fetal Intestine Large	intestine
31	chr5:154322400-154336400	Weak transcription	HSMM	muscle
32	chr5:154322400-154336600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:154322400-154337800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:154322400-154338400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr5:154322400-154338600	Weak transcription	NHLF	lung
36	chr5:154322400-154338800	Weak transcription	HMEC	breast
37	chr5:154322400-154338800	Weak transcription	NHDF-Ad	bronchial
38	chr5:154322400-154339000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr5:154322600-154335800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr5:154322600-154336600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:154322600-154337800	Weak transcription	Fetal Lung	lung
43	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr5:154322800-154346000	Weak transcription	Colon Smooth Muscle	Colon
45	chr5:154323000-154335400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:154323000-154336800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:154323000-154337600	Weak transcription	Thymus	Thymus
48	chr5:154323000-154337800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr5:154323000-154338200	Weak transcription	Pancreas	Pancrea
50	chr5:154324800-154338600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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