Variant report

Variant	rs11168350
Chromosome Location	chr12:48402628-48402629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48401338..48404101-chr12:48405666..48408506,2	MCF-7	breast:
2	chr12:48392139..48394442-chr12:48401448..48403262,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139219	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10492082	0.85[ASN][1000 genomes]
rs1049392	0.94[JPT][hapmap]
rs10747529	0.94[JPT][hapmap]
rs10875733	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10875739	0.94[JPT][hapmap]
rs10875752	0.94[JPT][hapmap]
rs10875754	0.94[JPT][hapmap]
rs10875761	0.94[JPT][hapmap]
rs10875766	0.94[JPT][hapmap]
rs11168353	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11168354	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11168358	0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs11168361	0.88[ASN][1000 genomes]
rs11168363	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168364	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168373	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11168404	0.94[JPT][hapmap]
rs11168417	0.94[JPT][hapmap]
rs11168424	0.93[JPT][hapmap]
rs11168434	0.94[JPT][hapmap]
rs11168435	0.94[JPT][hapmap]
rs11168438	0.91[JPT][hapmap]
rs11168445	0.94[JPT][hapmap]
rs11168448	0.94[JPT][hapmap]
rs11168453	0.94[JPT][hapmap]
rs11168454	0.94[JPT][hapmap]
rs12422355	0.94[JPT][hapmap]
rs12423250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1635527	0.93[YRI][hapmap]
rs17122567	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1793958	0.83[JPT][hapmap]
rs1793960	0.88[CHB][hapmap]
rs1859442	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1859443	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2056448	0.84[ASN][1000 genomes]
rs2240306	0.81[ASN][1000 genomes]
rs2286020	0.94[JPT][hapmap]
rs2408954	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3742075	0.87[JPT][hapmap]
rs3825403	0.94[JPT][hapmap]
rs4258439	0.94[JPT][hapmap]
rs58086963	0.96[ASN][1000 genomes]
rs59667534	0.85[ASN][1000 genomes]
rs7299704	0.94[JPT][hapmap]
rs7302354	0.94[JPT][hapmap]
rs7303677	0.94[JPT][hapmap]
rs7484942	0.94[JPT][hapmap]
rs765260	0.94[JPT][hapmap]
rs7962390	0.94[JPT][hapmap]
rs7962569	0.87[JPT][hapmap]
rs8181670	0.94[JPT][hapmap]
rs886589	0.94[JPT][hapmap]
rs954326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9651981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9669263	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9804751	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832401	chr12:48347453-48477999	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48399400-48415000	Weak transcription	Right Atrium	heart
2	chr12:48402400-48403000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:48402600-48402800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:48402600-48402800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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