Variant report

Variant	rs9804751
Chromosome Location	chr12:48403917-48403918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48394829..48397203-chr12:48403090..48404738,2	MCF-7	breast:
2	chr12:48401338..48404101-chr12:48405666..48408506,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10492082	0.85[ASN][1000 genomes]
rs1049392	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs10747529	0.94[JPT][hapmap]
rs10875733	0.96[GIH][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10875739	0.94[JPT][hapmap]
rs10875752	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs10875754	0.94[JPT][hapmap]
rs10875761	0.92[GIH][hapmap];0.94[JPT][hapmap]
rs10875766	0.94[JPT][hapmap]
rs11168350	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168353	1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11168354	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11168358	0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs11168361	0.88[ASN][1000 genomes]
rs11168363	0.96[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168364	0.96[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11168373	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11168404	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs11168417	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs11168424	0.96[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap]
rs11168434	0.94[JPT][hapmap]
rs11168435	0.92[GIH][hapmap];0.94[JPT][hapmap]
rs11168438	0.91[JPT][hapmap]
rs11168445	0.93[JPT][hapmap]
rs11168448	0.92[GIH][hapmap];0.94[JPT][hapmap]
rs11168453	0.92[GIH][hapmap];0.94[JPT][hapmap]
rs11168454	0.94[JPT][hapmap]
rs12228924	0.91[GIH][hapmap];0.82[MEX][hapmap]
rs12422355	0.94[JPT][hapmap]
rs12423250	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1635527	0.96[YRI][hapmap]
rs17122567	0.90[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1793958	0.83[JPT][hapmap]
rs1793960	0.89[CHB][hapmap]
rs1859442	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1859443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2056448	0.84[ASN][1000 genomes]
rs2240306	0.81[ASN][1000 genomes]
rs2286020	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs2408954	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3742075	0.86[JPT][hapmap]
rs3825403	0.94[JPT][hapmap]
rs4258439	0.94[JPT][hapmap]
rs58086963	0.96[ASN][1000 genomes]
rs59667534	0.85[ASN][1000 genomes]
rs7299704	0.94[JPT][hapmap]
rs7302354	0.94[JPT][hapmap]
rs7303677	0.96[GIH][hapmap];0.94[JPT][hapmap]
rs7484942	0.92[GIH][hapmap];0.94[JPT][hapmap]
rs765260	0.94[JPT][hapmap]
rs7962390	0.92[GIH][hapmap];0.94[JPT][hapmap]
rs7962569	0.92[GIH][hapmap];0.87[JPT][hapmap]
rs8181670	0.92[GIH][hapmap];0.94[JPT][hapmap]
rs886589	0.94[JPT][hapmap]
rs954326	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9651981	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9669263	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832401	chr12:48347453-48477999	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48399400-48415000	Weak transcription	Right Atrium	heart
2	chr12:48403000-48410200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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