Variant report

Variant	rs11169604
Chromosome Location	chr12:39200814-39200815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10160990	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1095573	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1095578	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169268	0.85[AFR][1000 genomes]
rs11169615	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11169618	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11537523	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1533917	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1533918	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1621487	0.86[AFR][1000 genomes]
rs1684426	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1719833	0.83[EUR][1000 genomes]
rs1719847	0.89[AFR][1000 genomes]
rs1719860	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1996879	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2069210	0.89[AFR][1000 genomes]
rs4002228	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826845	0.89[AFR][1000 genomes]
rs826847	0.89[AFR][1000 genomes]
rs826849	0.81[EUR][1000 genomes]
rs826853	0.85[AFR][1000 genomes]
rs826857	0.85[AFR][1000 genomes]
rs826869	0.85[AFR][1000 genomes]
rs826872	0.82[AFR][1000 genomes]
rs826882	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs826884	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs826885	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs851933	0.84[EUR][1000 genomes]
rs862332	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs866120	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39182600-39202800	Weak transcription	Liver	Liver
2	chr12:39184200-39205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:39200800-39205000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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