Variant report

Variant	rs11169618
Chromosome Location	chr12:39202576-39202577
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALG10B-8	chr12:39202554-39203514	ucscGeneNc_uc001rmj_1

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10160990	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1095573	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1095578	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11169268	0.82[EUR][1000 genomes]
rs11169604	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11169615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11537523	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1356267	0.85[EUR][1000 genomes]
rs1400281	0.88[EUR][1000 genomes]
rs1516553	0.84[EUR][1000 genomes]
rs1523119	0.85[EUR][1000 genomes]
rs1533917	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1533918	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1607040	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1615648	0.85[EUR][1000 genomes]
rs1621487	0.85[EUR][1000 genomes]
rs1684426	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1719833	0.96[EUR][1000 genomes]
rs1719847	0.85[EUR][1000 genomes]
rs1719860	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1914052	0.85[EUR][1000 genomes]
rs1996879	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056529	0.88[EUR][1000 genomes]
rs2069210	0.82[EUR][1000 genomes]
rs4002228	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4768394	0.88[EUR][1000 genomes]
rs7298168	0.88[EUR][1000 genomes]
rs7974247	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7978838	0.85[EUR][1000 genomes]
rs826840	0.80[EUR][1000 genomes]
rs826845	0.89[EUR][1000 genomes]
rs826847	0.89[EUR][1000 genomes]
rs826849	0.98[EUR][1000 genomes]
rs826853	0.82[EUR][1000 genomes]
rs826854	0.84[EUR][1000 genomes]
rs826857	0.82[EUR][1000 genomes]
rs826861	0.85[EUR][1000 genomes]
rs826862	0.85[EUR][1000 genomes]
rs826867	0.85[EUR][1000 genomes]
rs826868	0.87[EUR][1000 genomes]
rs826869	0.82[EUR][1000 genomes]
rs826871	0.82[EUR][1000 genomes]
rs826872	0.82[EUR][1000 genomes]
rs826882	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs826884	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs826885	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs826894	0.80[EUR][1000 genomes]
rs851933	0.82[EUR][1000 genomes]
rs862331	0.89[EUR][1000 genomes]
rs862332	0.96[EUR][1000 genomes]
rs866120	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39182600-39202800	Weak transcription	Liver	Liver
2	chr12:39184200-39205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:39200800-39205000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:39201200-39208000	Weak transcription	A549	lung
5	chr12:39201600-39208800	Weak transcription	Esophagus	oesophagus
6	chr12:39201800-39205600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:39201800-39216600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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