Variant report

Variant	rs1400281
Chromosome Location	chr12:39237456-39237457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10160990	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10732735	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1095573	0.90[EUR][1000 genomes]
rs11169615	0.88[EUR][1000 genomes]
rs11169618	0.88[EUR][1000 genomes]
rs11537523	0.88[EUR][1000 genomes]
rs1356267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1516553	0.90[EUR][1000 genomes]
rs1516557	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1533917	0.81[EUR][1000 genomes]
rs1533918	0.92[EUR][1000 genomes]
rs1607040	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1684426	0.85[EUR][1000 genomes]
rs1719833	0.88[EUR][1000 genomes]
rs1719860	0.85[EUR][1000 genomes]
rs1914052	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1996879	0.92[EUR][1000 genomes]
rs2056529	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4002228	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4768394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7298168	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7974247	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7978838	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826845	0.82[EUR][1000 genomes]
rs826847	0.82[EUR][1000 genomes]
rs826849	0.86[EUR][1000 genomes]
rs826884	0.88[EUR][1000 genomes]
rs826885	0.86[EUR][1000 genomes]
rs862331	0.82[EUR][1000 genomes]
rs862332	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39203200-39276000	Weak transcription	Aorta	Aorta
2	chr12:39204000-39284800	Weak transcription	Lung	lung
3	chr12:39206600-39243800	Weak transcription	Left Ventricle	heart
4	chr12:39206600-39249200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:39206800-39241400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr12:39206800-39241400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:39219200-39242600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:39221800-39251800	Weak transcription	Liver	Liver
9	chr12:39223600-39238400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:39224000-39241800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:39229400-39252200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:39232200-39239200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr12:39232400-39247600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:39233200-39241800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr12:39233200-39244000	Weak transcription	Right Atrium	heart
16	chr12:39233200-39245800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:39237200-39237600	ZNF genes & repeats	GM12878-XiMat	blood
18	chr12:39237400-39239200	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links