Variant report

Variant	rs10732735
Chromosome Location	chr12:39305109-39305110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10160990	0.85[CEU][hapmap]
rs1095573	0.87[CEU][hapmap]
rs1356267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1400281	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1516557	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1533918	0.87[CEU][hapmap]
rs1607040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1615648	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs1719833	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs1719847	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs1878225	0.80[JPT][hapmap]
rs1914052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2056529	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2069210	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs4768394	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7298168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7974247	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7978838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826849	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs826853	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs826860	0.90[JPT][hapmap]
rs826861	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs826862	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs826869	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs826872	0.93[JPT][hapmap]
rs826884	0.85[CEU][hapmap]
rs851933	0.89[JPT][hapmap]
rs862331	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs866120	0.85[CEU][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39305000-39305400	Enhancers	Pancreatic Islets	Pancreatic Islet

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