Variant report

Variant	rs11171625
Chromosome Location	chr12:56026816-56026817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10876836	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10876837	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10876841	1.00[CEU][hapmap]
rs11171623	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs11171626	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs11171629	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11171631	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11171632	1.00[CEU][hapmap]
rs12227020	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3858536	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56023200-56036800	Weak transcription	Spleen	Spleen
2	chr12:56025400-56027200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:56025400-56027600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:56025400-56027800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr12:56025800-56035200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr12:56026600-56029400	Weak transcription	Left Ventricle	heart
7	chr12:56026600-56030800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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