Variant report

Variant	rs3858536
Chromosome Location	chr12:56048203-56048204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10876836	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs10876837	0.88[CEU][hapmap];0.82[CHD][hapmap]
rs10876841	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11171623	0.89[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11171625	0.88[CEU][hapmap]
rs11171626	0.88[CEU][hapmap]
rs11171631	0.88[CEU][hapmap]
rs11171632	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11171636	0.84[EUR][1000 genomes]
rs11171638	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11171640	0.98[ASN][1000 genomes]
rs4759184	0.89[ASN][1000 genomes]
rs58126534	0.88[ASN][1000 genomes]
rs7952953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977724	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56040400-56048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:56041200-56048400	Weak transcription	Lung	lung
3	chr12:56045400-56048600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr12:56045400-56050200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:56045600-56049200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:56045800-56050800	Weak transcription	HepG2	liver
7	chr12:56046400-56050200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr12:56046600-56050200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:56047000-56049800	Weak transcription	Fetal Intestine Small	intestine
10	chr12:56047000-56050000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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