Variant report

Variant	rs11171678
Chromosome Location	chr12:56186489-56186490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:56184033..56187012-chr12:56190030..56192705,3	K562	blood:
2	chr12:56129313..56132874-chr12:56186006..56190990,5	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17844794	1.00[CEU][hapmap]
rs2071024	1.00[CEU][hapmap]
rs4359251	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832423	chr12:56080822-56253698	Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56142000-56191800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:56144600-56208800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:56144800-56198600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr12:56145200-56199400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:56149400-56209600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:56152800-56209000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:56160000-56197600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:56160400-56209600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:56163000-56198600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:56163200-56199800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:56163200-56209400	Strong transcription	Fetal Thymus	thymus
12	chr12:56163400-56198000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr12:56164000-56197600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr12:56166400-56194600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:56169200-56195400	Strong transcription	Primary B cells from cord blood	blood
16	chr12:56169200-56197600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:56169400-56198400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:56169400-56198600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr12:56169400-56198600	Strong transcription	Dnd41	blood
20	chr12:56169600-56198200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:56169600-56198200	Strong transcription	Liver	Liver
22	chr12:56169800-56197600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr12:56169800-56203400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr12:56169800-56204200	Strong transcription	Fetal Muscle Leg	muscle
25	chr12:56170000-56190800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:56170000-56197400	Strong transcription	Duodenum Mucosa	Duodenum
27	chr12:56170000-56197800	Strong transcription	Fetal Intestine Large	intestine
28	chr12:56170000-56198800	Strong transcription	HUVEC	blood vessel
29	chr12:56170200-56197400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr12:56170200-56198800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr12:56170200-56204200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr12:56171000-56190600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:56171400-56197600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr12:56171400-56197600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr12:56171400-56198600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr12:56171600-56190800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr12:56171600-56197600	Strong transcription	Osteobl	bone
38	chr12:56172400-56199800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:56174400-56199800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr12:56174800-56195400	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr12:56175000-56190000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr12:56175000-56199200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr12:56175200-56186800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
44	chr12:56175200-56197600	Strong transcription	GM12878-XiMat	blood
45	chr12:56175200-56199800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:56175200-56204200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr12:56175400-56198800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr12:56175600-56198600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr12:56176200-56197600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr12:56177400-56191000	Strong transcription	A549	lung

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