Variant report
| Variant | rs2071024 |
|---|---|
| Chromosome Location | chr12:56351128-56351129 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:56328800-56352200 | Weak transcription | Small Intestine | intestine |
| 2 | chr12:56336800-56351600 | Strong transcription | Primary T cells from cord blood | blood |
| 3 | chr12:56345000-56352200 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 4 | chr12:56345000-56353000 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 5 | chr12:56345000-56353000 | Strong transcription | iPS-15b Cell Line | embryonic stem cell |
| 6 | chr12:56345000-56353600 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 7 | chr12:56345000-56354000 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 8 | chr12:56345400-56359000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 9 | chr12:56345600-56351200 | Weak transcription | HepG2 | liver |
| 10 | chr12:56345600-56353200 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 11 | chr12:56345800-56351200 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 12 | chr12:56346000-56352400 | Strong transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 13 | chr12:56346400-56352400 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
| 14 | chr12:56346600-56351600 | Weak transcription | Brain Angular Gyrus | brain |
| 15 | chr12:56346600-56360000 | Weak transcription | Brain Cingulate Gyrus | brain |
| 16 | chr12:56346800-56359400 | Weak transcription | Brain Anterior Caudate | brain |
| 17 | chr12:56347000-56353800 | Weak transcription | Ovary | ovary |
| 18 | chr12:56347000-56359600 | Weak transcription | Primary hematopoietic stem cells | blood |
| 19 | chr12:56347200-56360000 | Weak transcription | HSMMtube | muscle |
| 20 | chr12:56347400-56351200 | Strong transcription | ES-I3 Cell Line | embryonic stem cell |
| 21 | chr12:56347400-56352600 | Strong transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 22 | chr12:56347400-56354200 | Transcr. at gene 5' and 3' | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 23 | chr12:56347400-56359600 | Weak transcription | Rectal Smooth Muscle | rectum |
| 24 | chr12:56347400-56359800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 25 | chr12:56347400-56359800 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 26 | chr12:56347600-56359800 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 27 | chr12:56347800-56359400 | Weak transcription | Stomach Smooth Muscle | stomach |
| 28 | chr12:56348000-56352400 | Strong transcription | H9 Cell Line | embryonic stem cell |
| 29 | chr12:56348200-56351200 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 30 | chr12:56348200-56351600 | Weak transcription | Primary T killer naive cells fromperipheralblood | blood |
| 31 | chr12:56348200-56351600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 32 | chr12:56348200-56351600 | Weak transcription | HSMM | muscle |
| 33 | chr12:56348200-56359400 | Weak transcription | Liver | Liver |
| 34 | chr12:56348200-56359600 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 35 | chr12:56348200-56360000 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 36 | chr12:56348400-56351200 | Weak transcription | Lung | lung |
| 37 | chr12:56348400-56351600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 38 | chr12:56348400-56351600 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
| 39 | chr12:56348400-56351600 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 40 | chr12:56348400-56351800 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 41 | chr12:56348400-56351800 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 42 | chr12:56348400-56359600 | Weak transcription | Primary B cells from cord blood | blood |
| 43 | chr12:56348400-56359600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 44 | chr12:56348400-56359800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 45 | chr12:56348400-56359800 | Weak transcription | Fetal Lung | lung |
| 46 | chr12:56348800-56351800 | Enhancers | Fetal Intestine Small | intestine |
| 47 | chr12:56348800-56352200 | Enhancers | Placenta | Placenta |
| 48 | chr12:56348800-56359600 | Weak transcription | Spleen | Spleen |
| 49 | chr12:56349000-56351800 | Strong transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 50 | chr12:56349200-56351800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
