Variant report
| Variant | rs2271188 |
|---|---|
| Chromosome Location | chr12:56495023-56495024 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:56474400-56497200 | Weak transcription | Right Atrium | heart |
| 2 | chr12:56476200-56497200 | Weak transcription | Fetal Kidney | kidney |
| 3 | chr12:56476600-56496400 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
| 4 | chr12:56476600-56497600 | Weak transcription | Small Intestine | intestine |
| 5 | chr12:56477000-56497000 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 6 | chr12:56477000-56497000 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 7 | chr12:56477600-56496600 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 8 | chr12:56477800-56496200 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 9 | chr12:56478600-56496400 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 10 | chr12:56479200-56496000 | Strong transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 11 | chr12:56479200-56496400 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 12 | chr12:56479400-56496800 | Strong transcription | Fetal Intestine Small | intestine |
| 13 | chr12:56479400-56497200 | Strong transcription | Fetal Intestine Large | intestine |
| 14 | chr12:56480000-56495800 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 15 | chr12:56480000-56496400 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 16 | chr12:56481200-56496200 | Strong transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 17 | chr12:56481200-56496800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 18 | chr12:56481200-56497000 | Weak transcription | Hela-S3 | cervix |
| 19 | chr12:56481600-56496400 | Strong transcription | Rectal Mucosa Donor 31 | rectum |
| 20 | chr12:56481600-56496600 | Strong transcription | Placenta | Placenta |
| 21 | chr12:56481600-56497000 | Strong transcription | Fetal Muscle Leg | muscle |
| 22 | chr12:56481600-56497200 | Strong transcription | Liver | Liver |
| 23 | chr12:56482800-56497600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 24 | chr12:56484200-56496800 | Strong transcription | Rectal Mucosa Donor 29 | rectum |
| 25 | chr12:56485000-56496000 | Strong transcription | Sigmoid Colon | Sigmoid Colon |
| 26 | chr12:56485200-56496200 | Strong transcription | H9 Cell Line | embryonic stem cell |
| 27 | chr12:56485200-56496400 | Strong transcription | Placenta Amnion | Placenta Amnion |
| 28 | chr12:56485800-56496200 | Strong transcription | HepG2 | liver |
| 29 | chr12:56486000-56496000 | Strong transcription | Fetal Stomach | stomach |
| 30 | chr12:56486000-56496000 | Strong transcription | Pancreas | Pancrea |
| 31 | chr12:56486400-56495600 | Strong transcription | Brain Substantia Nigra | brain |
| 32 | chr12:56486600-56496000 | Strong transcription | Fetal Muscle Trunk | muscle |
| 33 | chr12:56486600-56496400 | Strong transcription | Brain Hippocampus Middle | brain |
| 34 | chr12:56486800-56495600 | Strong transcription | Gastric | stomach |
| 35 | chr12:56487200-56495800 | Strong transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 36 | chr12:56488400-56497000 | Weak transcription | Stomach Mucosa | stomach |
| 37 | chr12:56489200-56497600 | Weak transcription | Lung | lung |
| 38 | chr12:56489800-56496000 | Strong transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 39 | chr12:56490200-56495400 | Strong transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 40 | chr12:56490600-56497400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 41 | chr12:56491000-56497600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 42 | chr12:56491200-56495400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 43 | chr12:56491800-56496400 | Weak transcription | K562 | blood |
| 44 | chr12:56491800-56496800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 45 | chr12:56491800-56497000 | Weak transcription | Brain Angular Gyrus | brain |
| 46 | chr12:56492000-56496800 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 47 | chr12:56492400-56495200 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 48 | chr12:56492400-56497000 | Weak transcription | Colon Smooth Muscle | Colon |
| 49 | chr12:56492600-56497200 | Weak transcription | Rectal Smooth Muscle | rectum |
| 50 | chr12:56492800-56497400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
