Variant report

Variant	rs11171941
Chromosome Location	chr12:57084434-57084435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57026160..57032326-chr12:57079667..57084551,17	K562	blood:
2	chr12:57075341..57085478-chr12:57112447..57121011,58	MCF-7	breast:
3	chr12:57037950..57041719-chr12:57080496..57084678,10	K562	blood:
4	chr12:57027161..57032164-chr12:57080546..57084524,13	MCF-7	breast:
5	chr12:57022974..57025489-chr12:57082990..57085846,2	K562	blood:
6	chr12:57078475..57085183-chr12:57112918..57121559,38	K562	blood:
7	chr12:57027023..57035553-chr12:57079936..57085201,18	MCF-7	breast:
8	chr12:57083216..57084754-chr12:57482270..57484248,2	K562	blood:
9	chr12:57037416..57042033-chr12:57076746..57084678,17	K562	blood:
10	chr12:57080718..57083642-chr12:57083960..57087644,5	MCF-7	breast:
11	chr12:57028651..57034442-chr12:57080412..57084452,17	K562	blood:
12	chr12:57074578..57085543-chr12:57108746..57121559,55	K562	blood:
13	chr12:57076604..57085974-chr12:57112559..57120474,46	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000207031	Chromatin interaction
ENSG00000110955	Chromatin interaction
ENSG00000110958	Chromatin interaction
ENSG00000076108	Chromatin interaction
ENSG00000166886	Chromatin interaction
ENSG00000196531	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11171909	1.00[CHD][hapmap]
rs11171935	1.00[LWK][hapmap]
rs13378079	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57083400-57088000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:57083400-57088800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr12:57083400-57089000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:57083400-57089000	Weak transcription	Psoas Muscle	Psoas
5	chr12:57083400-57089200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:57083800-57088800	Weak transcription	Fetal Muscle Leg	muscle
7	chr12:57083800-57090200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr12:57083800-57105200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:57084000-57085800	Weak transcription	GM12878-XiMat	blood
10	chr12:57084000-57094400	Weak transcription	Fetal Thymus	thymus
11	chr12:57084200-57084600	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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