Variant report

Variant	rs1117324
Chromosome Location	chr2:21840093-21840094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10200700	0.89[ASN][1000 genomes]
rs10865471	0.93[ASN][1000 genomes]
rs11126834	0.85[ASN][1000 genomes]
rs1159628	0.90[ASN][1000 genomes]
rs1477473	0.89[ASN][1000 genomes]
rs1991126	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4302240	0.90[ASN][1000 genomes]
rs4665370	0.90[ASN][1000 genomes]
rs4665942	0.90[ASN][1000 genomes]
rs6723855	0.89[ASN][1000 genomes]
rs6739328	0.91[ASN][1000 genomes]
rs6744013	0.89[ASN][1000 genomes]
rs970127	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1003122	chr2:21822998-21852600	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv1011732	chr2:21822998-21857207	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Response to antipsychotic treatment	20195266	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1117324	CXCL11	trans	brain	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21840000-21841200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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