Variant report

Variant	rs10865471
Chromosome Location	chr2:21813495-21813496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10170974	0.87[EUR][1000 genomes]
rs10200700	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10209178	1.00[EUR][1000 genomes]
rs10211154	1.00[EUR][1000 genomes]
rs10211567	1.00[EUR][1000 genomes]
rs11126823	1.00[EUR][1000 genomes]
rs11126834	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11126835	1.00[EUR][1000 genomes]
rs11126863	1.00[EUR][1000 genomes]
rs1117324	0.93[ASN][1000 genomes]
rs1159628	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1160573	0.88[AMR][1000 genomes]
rs13000075	1.00[EUR][1000 genomes]
rs13019267	1.00[EUR][1000 genomes]
rs13397909	1.00[EUR][1000 genomes]
rs13399023	1.00[EUR][1000 genomes]
rs13419505	1.00[EUR][1000 genomes]
rs13428126	1.00[EUR][1000 genomes]
rs13430827	1.00[EUR][1000 genomes]
rs13431557	0.96[AMR][1000 genomes]
rs1477471	1.00[EUR][1000 genomes]
rs1477472	1.00[EUR][1000 genomes]
rs1477473	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17042618	1.00[EUR][1000 genomes]
rs1968279	1.00[EUR][1000 genomes]
rs1991126	0.94[ASN][1000 genomes]
rs2042523	1.00[EUR][1000 genomes]
rs2059395	1.00[EUR][1000 genomes]
rs2113623	0.96[AMR][1000 genomes]
rs2194560	0.87[EUR][1000 genomes]
rs2194561	0.88[AMR][1000 genomes]
rs2194567	1.00[EUR][1000 genomes]
rs2216878	1.00[EUR][1000 genomes]
rs2288150	1.00[EUR][1000 genomes]
rs2288151	1.00[EUR][1000 genomes]
rs4302240	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4473414	1.00[EUR][1000 genomes]
rs4665344	0.84[AMR][1000 genomes]
rs4665367	1.00[EUR][1000 genomes]
rs4665368	1.00[EUR][1000 genomes]
rs4665369	1.00[EUR][1000 genomes]
rs4665370	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4665932	0.91[AMR][1000 genomes]
rs4665942	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4665953	1.00[EUR][1000 genomes]
rs57208668	1.00[EUR][1000 genomes]
rs6547383	1.00[EUR][1000 genomes]
rs6547384	1.00[EUR][1000 genomes]
rs6547423	1.00[EUR][1000 genomes]
rs6712593	1.00[EUR][1000 genomes]
rs6723855	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6738468	1.00[EUR][1000 genomes]
rs6739328	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6743443	1.00[EUR][1000 genomes]
rs6744013	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6744152	1.00[EUR][1000 genomes]
rs6747084	1.00[EUR][1000 genomes]
rs6747935	1.00[EUR][1000 genomes]
rs72892282	0.87[EUR][1000 genomes]
rs73921223	1.00[EUR][1000 genomes]
rs7563902	1.00[EUR][1000 genomes]
rs7575945	1.00[EUR][1000 genomes]
rs7581794	0.84[AMR][1000 genomes]
rs956046	0.81[AMR][1000 genomes]
rs970125	1.00[EUR][1000 genomes]
rs970126	1.00[EUR][1000 genomes]
rs970127	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs979038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21811800-21813800	Enhancers	Brain Germinal Matrix	brain
2	chr2:21812000-21813600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:21812400-21813600	Enhancers	Fetal Brain Male	brain
4	chr2:21812600-21815400	Enhancers	Fetal Lung	lung
5	chr2:21813000-21815400	Enhancers	Fetal Brain Female	brain
6	chr2:21813400-21813600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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