Variant report

Variant	rs2194561
Chromosome Location	chr2:21768885-21768886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1016415	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10170974	0.89[EUR][1000 genomes]
rs10172456	1.00[EUR][1000 genomes]
rs10200700	0.84[AMR][1000 genomes]
rs10865471	0.88[AMR][1000 genomes]
rs11126670	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1159628	0.84[AMR][1000 genomes]
rs1160573	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13383421	0.85[ASN][1000 genomes]
rs13431557	0.84[AMR][1000 genomes]
rs1477473	0.84[AMR][1000 genomes]
rs2113623	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2194560	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35299375	0.86[ASN][1000 genomes]
rs4302240	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4665344	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4665370	0.84[AMR][1000 genomes]
rs4665932	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4665942	0.80[AMR][1000 genomes]
rs58722375	1.00[EUR][1000 genomes]
rs6723855	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6739328	0.84[AMR][1000 genomes]
rs6744013	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7581794	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs956046	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs970127	0.84[AMR][1000 genomes]
rs9710941	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21768400-21769400	Enhancers	Brain Germinal Matrix	brain

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