Variant report

Variant	rs10170974
Chromosome Location	chr2:21736470-21736471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1016415	0.89[EUR][1000 genomes]
rs10172456	0.89[EUR][1000 genomes]
rs10200700	0.87[EUR][1000 genomes]
rs10209178	0.87[EUR][1000 genomes]
rs10211154	0.87[EUR][1000 genomes]
rs10211567	0.87[EUR][1000 genomes]
rs10865471	0.87[EUR][1000 genomes]
rs11126823	0.87[EUR][1000 genomes]
rs11126835	0.87[EUR][1000 genomes]
rs11126863	0.87[EUR][1000 genomes]
rs1159628	0.87[EUR][1000 genomes]
rs1160573	0.89[EUR][1000 genomes]
rs13000075	0.87[EUR][1000 genomes]
rs13019267	0.87[EUR][1000 genomes]
rs13383421	0.83[ASN][1000 genomes]
rs13397909	0.87[EUR][1000 genomes]
rs13399023	0.87[EUR][1000 genomes]
rs13419505	0.87[EUR][1000 genomes]
rs13428126	0.87[EUR][1000 genomes]
rs13430827	0.87[EUR][1000 genomes]
rs1477471	0.87[EUR][1000 genomes]
rs1477472	0.87[EUR][1000 genomes]
rs1477473	0.87[EUR][1000 genomes]
rs17042618	0.87[EUR][1000 genomes]
rs1968279	0.87[EUR][1000 genomes]
rs2042523	0.87[EUR][1000 genomes]
rs2059395	0.87[EUR][1000 genomes]
rs2113623	0.89[EUR][1000 genomes]
rs2194560	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2194561	0.89[EUR][1000 genomes]
rs2194567	0.87[EUR][1000 genomes]
rs2216878	0.87[EUR][1000 genomes]
rs2288150	0.87[EUR][1000 genomes]
rs2288151	0.87[EUR][1000 genomes]
rs4473414	0.87[EUR][1000 genomes]
rs4665330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4665344	0.89[EUR][1000 genomes]
rs4665367	0.87[EUR][1000 genomes]
rs4665368	0.87[EUR][1000 genomes]
rs4665369	0.87[EUR][1000 genomes]
rs4665370	0.87[EUR][1000 genomes]
rs4665932	0.89[EUR][1000 genomes]
rs4665942	0.87[EUR][1000 genomes]
rs4665953	0.87[EUR][1000 genomes]
rs57208668	0.87[EUR][1000 genomes]
rs58722375	0.89[EUR][1000 genomes]
rs6547383	0.87[EUR][1000 genomes]
rs6547384	0.87[EUR][1000 genomes]
rs6547423	0.87[EUR][1000 genomes]
rs6712593	0.87[EUR][1000 genomes]
rs6738468	0.87[EUR][1000 genomes]
rs6739328	0.87[EUR][1000 genomes]
rs6743443	0.87[EUR][1000 genomes]
rs6744152	0.87[EUR][1000 genomes]
rs6747084	0.87[EUR][1000 genomes]
rs6747935	0.87[EUR][1000 genomes]
rs73921223	0.87[EUR][1000 genomes]
rs7563902	0.87[EUR][1000 genomes]
rs7575945	0.87[EUR][1000 genomes]
rs7581794	0.89[EUR][1000 genomes]
rs970125	0.87[EUR][1000 genomes]
rs970126	0.87[EUR][1000 genomes]
rs970127	0.87[EUR][1000 genomes]
rs979038	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21725000-21741400	Weak transcription	Ovary	ovary

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