Variant report

Variant	rs1016415
Chromosome Location	chr2:21742900-21742901
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10170974	0.89[EUR][1000 genomes]
rs10172456	1.00[EUR][1000 genomes]
rs11126670	0.92[ASN][1000 genomes]
rs1160573	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13383421	0.89[ASN][1000 genomes]
rs2113623	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2194560	0.89[EUR][1000 genomes]
rs2194561	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4302240	0.89[EUR][1000 genomes]
rs4665344	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4665932	1.00[EUR][1000 genomes]
rs58722375	1.00[EUR][1000 genomes]
rs6723855	0.89[EUR][1000 genomes]
rs6744013	0.89[EUR][1000 genomes]
rs7581794	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs956046	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9710941	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21741200-21743400	Enhancers	Brain Germinal Matrix	brain
2	chr2:21741400-21743000	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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