Variant report

Variant	rs13431557
Chromosome Location	chr2:21804292-21804293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10200700	1.00[AMR][1000 genomes]
rs10202049	0.87[ASN][1000 genomes]
rs10865471	0.96[AMR][1000 genomes]
rs1159628	1.00[AMR][1000 genomes]
rs1160573	0.84[AMR][1000 genomes]
rs1476119	0.91[ASN][1000 genomes]
rs1477473	1.00[AMR][1000 genomes]
rs2113623	1.00[AMR][1000 genomes]
rs2194561	0.84[AMR][1000 genomes]
rs4302240	1.00[AMR][1000 genomes]
rs4665344	0.80[AMR][1000 genomes]
rs4665370	1.00[AMR][1000 genomes]
rs4665932	0.96[AMR][1000 genomes]
rs4665942	0.96[AMR][1000 genomes]
rs4665994	0.87[ASN][1000 genomes]
rs6547745	0.87[ASN][1000 genomes]
rs6723855	1.00[AMR][1000 genomes]
rs6739328	1.00[AMR][1000 genomes]
rs6744013	1.00[AMR][1000 genomes]
rs7574035	0.87[ASN][1000 genomes]
rs7581794	0.80[AMR][1000 genomes]
rs970127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21790600-21804800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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