Variant report

Variant	rs11173302
Chromosome Location	chr12:60440776-60440777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60439937..60442180-chr12:60446699..60448272,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10160895	0.86[ASN][1000 genomes]
rs10735882	0.89[ASN][1000 genomes]
rs10747861	0.88[ASN][1000 genomes]
rs10784014	0.88[ASN][1000 genomes]
rs10784015	0.88[ASN][1000 genomes]
rs10784022	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877365	0.86[ASN][1000 genomes]
rs11173225	0.86[ASN][1000 genomes]
rs11173226	0.86[ASN][1000 genomes]
rs11173227	0.86[ASN][1000 genomes]
rs11173228	0.86[ASN][1000 genomes]
rs11173229	0.86[ASN][1000 genomes]
rs11173231	0.88[ASN][1000 genomes]
rs11173233	0.88[ASN][1000 genomes]
rs11173268	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11173276	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173291	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609497	0.83[ASN][1000 genomes]
rs11609524	0.89[ASN][1000 genomes]
rs12370452	0.86[ASN][1000 genomes]
rs12372035	0.88[ASN][1000 genomes]
rs12423658	0.89[ASN][1000 genomes]
rs12820688	0.88[ASN][1000 genomes]
rs1602835	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35425604	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36112146	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288788	0.88[ASN][1000 genomes]
rs4291710	0.86[ASN][1000 genomes]
rs4363643	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4492855	0.86[ASN][1000 genomes]
rs4534617	0.80[EUR][1000 genomes]
rs4614493	0.89[ASN][1000 genomes]
rs4758736	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758874	0.91[ASN][1000 genomes]
rs4758878	0.86[ASN][1000 genomes]
rs4758879	0.87[ASN][1000 genomes]
rs6581285	0.89[ASN][1000 genomes]
rs6581296	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7303843	0.83[EUR][1000 genomes]
rs7954965	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965070	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968106	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899136	chr12:60373244-60483607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv559103	chr12:60383069-60483607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1048137	chr12:60432594-60515455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv983487	chr12:60434760-60442347	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60437000-60442400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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