Variant report

Variant	rs7954965
Chromosome Location	chr12:60393735-60393736
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10160895	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10160973	0.83[EUR][1000 genomes]
rs10161437	0.83[EUR][1000 genomes]
rs10735882	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10747861	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784010	0.83[EUR][1000 genomes]
rs10784014	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784015	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784022	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877360	0.83[EUR][1000 genomes]
rs10877361	0.83[EUR][1000 genomes]
rs10877362	0.83[EUR][1000 genomes]
rs10877363	0.83[EUR][1000 genomes]
rs10877364	0.82[EUR][1000 genomes]
rs10877365	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11173205	0.83[EUR][1000 genomes]
rs11173206	0.81[EUR][1000 genomes]
rs11173207	0.83[EUR][1000 genomes]
rs11173208	0.83[EUR][1000 genomes]
rs11173212	0.83[EUR][1000 genomes]
rs11173217	0.83[EUR][1000 genomes]
rs11173225	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11173226	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11173227	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11173228	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11173229	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11173231	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11173233	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11173268	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11173276	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173291	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173302	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609497	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11609524	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12303323	0.83[EUR][1000 genomes]
rs12304178	0.83[EUR][1000 genomes]
rs12309079	0.83[EUR][1000 genomes]
rs12309131	0.83[EUR][1000 genomes]
rs12320040	0.83[EUR][1000 genomes]
rs12322528	0.83[EUR][1000 genomes]
rs12322648	0.83[EUR][1000 genomes]
rs12370452	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12372035	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12423658	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12820688	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1602835	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34089860	0.82[EUR][1000 genomes]
rs34528640	0.82[EUR][1000 genomes]
rs35425604	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36112146	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288788	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4291710	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4363643	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4492855	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4534617	0.82[EUR][1000 genomes]
rs4614493	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4623940	0.83[EUR][1000 genomes]
rs4758736	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758874	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758878	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4758879	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5026694	0.83[EUR][1000 genomes]
rs61935612	0.83[EUR][1000 genomes]
rs6581285	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6581296	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7303843	1.00[EUR][1000 genomes]
rs7965070	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968106	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9943708	0.88[EUR][1000 genomes]
rs9943716	0.88[EUR][1000 genomes]
rs9943772	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv899136	chr12:60373244-60483607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv559103	chr12:60383069-60483607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60377400-60403800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:60392600-60395200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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