Variant report

Variant	rs11174688
Chromosome Location	chr12:40394255-40394256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11175139	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11564223	0.83[YRI][hapmap]
rs12296596	0.83[YRI][hapmap]
rs12300008	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12307850	0.83[YRI][hapmap]
rs12308447	0.83[YRI][hapmap]
rs12312535	0.83[YRI][hapmap]
rs12313568	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12314745	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs28370644	1.00[YRI][hapmap]
rs7132755	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7302067	0.83[AFR][1000 genomes]
rs7309328	1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7358651	0.81[AFR][1000 genomes]
rs9804954	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv899027	chr12:40388510-40428561	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40384400-40405200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:40384400-40405400	Weak transcription	Pancreas	Pancrea
3	chr12:40393400-40394400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
4	chr12:40393400-40405400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:40393800-40396400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:40394000-40394800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr12:40394000-40405400	Weak transcription	Left Ventricle	heart
8	chr12:40394000-40410800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:40394200-40394400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:40394200-40394400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr12:40394200-40394400	ZNF genes & repeats	Hela-S3	cervix
12	chr12:40394200-40403800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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