Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11174688	0.83[YRI][hapmap]
rs11175139	0.83[YRI][hapmap]
rs11175629	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs11175659	0.85[AFR][1000 genomes]
rs11175663	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs12296317	0.85[AFR][1000 genomes]
rs12296964	1.00[AFR][1000 genomes]
rs12300008	0.83[YRI][hapmap]
rs12304648	0.88[AFR][1000 genomes]
rs12305241	0.81[AFR][1000 genomes]
rs12306744	1.00[AFR][1000 genomes]
rs12307850	1.00[ASW][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12308447	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12312800	0.97[AFR][1000 genomes]
rs12313568	0.83[YRI][hapmap]
rs12314745	0.83[YRI][hapmap]
rs17489951	0.83[AFR][1000 genomes]
rs17490300	0.85[AFR][1000 genomes]
rs28370644	0.83[YRI][hapmap]
rs7132755	0.83[YRI][hapmap]
rs7135556	0.88[AFR][1000 genomes]
rs7135747	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558596	chr12:40413698-40591117	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40586000-40591000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:40586200-40591600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:40587200-40590400	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:40588000-40590400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:40588600-40590400	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:40589400-40590200	Enhancers	Primary B cells from cord blood	blood
7	chr12:40589600-40592200	Enhancers	Monocytes-CD14+_RO01746	blood

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