Variant report

Variant	rs11174804
Chromosome Location	chr12:63531303-63531304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10877966	1.00[ASN][1000 genomes]
rs10877967	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10877978	0.91[ASN][1000 genomes]
rs10877982	0.91[ASN][1000 genomes]
rs11174808	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11174810	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11174816	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11174828	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11174840	0.91[ASN][1000 genomes]
rs11174841	0.91[ASN][1000 genomes]
rs12227476	0.90[ASN][1000 genomes]
rs12297389	0.91[ASN][1000 genomes]
rs1774	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1812476	0.89[ASN][1000 genomes]
rs3021528	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3741865	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56218817	0.89[ASN][1000 genomes]
rs61353632	0.94[ASN][1000 genomes]
rs61554779	0.91[ASN][1000 genomes]
rs7358710	0.91[ASN][1000 genomes]
rs7954346	0.94[ASN][1000 genomes]
rs7967990	0.94[ASN][1000 genomes]
rs7976075	1.00[ASN][1000 genomes]
rs7980289	0.93[ASN][1000 genomes]
rs962862	0.94[ASN][1000 genomes]
rs9805119	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv469592	chr12:63486510-63679139	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv482578	chr12:63486510-63679139	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv832436	chr12:63503993-63658112	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035736	chr12:63526274-63920372	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv541510	chr12:63526274-63920372	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63530600-63532200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:63531000-63538400	Weak transcription	Liver	Liver

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