Variant report
| Variant | rs1774 |
|---|---|
| Chromosome Location | chr12:63537164-63537165 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:63535701..63537481-chr12:63551924..63553918,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10877966 | 0.94[ASN][1000 genomes] |
| rs10877967 | 1.00[ASN][1000 genomes] |
| rs10877978 | 0.97[ASN][1000 genomes] |
| rs10877982 | 0.94[ASN][1000 genomes] |
| rs11174804 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11174808 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11174810 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs11174816 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11174828 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11174840 | 0.97[ASN][1000 genomes] |
| rs11174841 | 0.97[ASN][1000 genomes] |
| rs12227476 | 0.96[ASN][1000 genomes] |
| rs12297389 | 0.97[ASN][1000 genomes] |
| rs1812476 | 0.94[ASN][1000 genomes] |
| rs3021528 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3741865 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56218817 | 0.94[ASN][1000 genomes] |
| rs61353632 | 1.00[ASN][1000 genomes] |
| rs61554779 | 0.97[ASN][1000 genomes] |
| rs7358710 | 0.97[ASN][1000 genomes] |
| rs7954346 | 1.00[ASN][1000 genomes] |
| rs7967990 | 1.00[ASN][1000 genomes] |
| rs7976075 | 0.94[ASN][1000 genomes] |
| rs7980289 | 0.99[ASN][1000 genomes] |
| rs962862 | 1.00[ASN][1000 genomes] |
| rs9805119 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3415227 | chr12:63228121-63591615 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046836 | chr12:63392391-64377169 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 3 | nsv469592 | chr12:63486510-63679139 | Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv482578 | chr12:63486510-63679139 | Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 5 | nsv832436 | chr12:63503993-63658112 | Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv1035736 | chr12:63526274-63920372 | Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 7 | nsv541510 | chr12:63526274-63920372 | Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:63531000-63538400 | Weak transcription | Liver | Liver |
