Variant report

Variant	rs11176936
Chromosome Location	chr12:68303538-68303539
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:68302716..68305733-chr12:68312803..68316283,4	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10878695	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878696	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878697	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11176937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1351768	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1905453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2041769	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2160243	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2160244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192784	0.92[CEU][hapmap];0.81[AMR][1000 genomes]
rs2192785	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2216012	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2904502	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908764	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2930118	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2930120	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3015000	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv899219	chr12:68293419-68353649	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68299800-68304600	Weak transcription	Brain Substantia Nigra	brain
2	chr12:68302200-68304600	Enhancers	HSMMtube	muscle
3	chr12:68302400-68304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:68302400-68304600	Enhancers	HSMM	muscle
5	chr12:68302400-68304600	Enhancers	NHEK	skin
6	chr12:68302400-68305200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:68302400-68305200	Enhancers	Osteobl	bone
8	chr12:68302400-68305800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:68302400-68307800	Enhancers	Fetal Muscle Leg	muscle
10	chr12:68302600-68305400	Enhancers	NHLF	lung
11	chr12:68302600-68305600	Enhancers	HMEC	breast
12	chr12:68302600-68310000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:68302800-68303600	Enhancers	Rectal Smooth Muscle	rectum
14	chr12:68302800-68304000	Enhancers	A549	lung
15	chr12:68302800-68304600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:68302800-68305200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr12:68302800-68305400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:68302800-68305400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:68302800-68305600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:68303000-68304200	Enhancers	Fetal Heart	heart
21	chr12:68303000-68304600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr12:68303000-68305800	Enhancers	NHDF-Ad	bronchial
23	chr12:68303200-68303600	Enhancers	NH-A	brain
24	chr12:68303200-68304000	Enhancers	Colon Smooth Muscle	Colon
25	chr12:68303400-68303600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr12:68303400-68303800	Enhancers	Muscle Satellite Cultured Cells	--

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