Variant report

Variant	rs2908764
Chromosome Location	chr12:68312016-68312017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:68306230..68308010-chr12:68310665..68313391,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10878695	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10878696	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10878697	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11176936	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11176937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1351768	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1905453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041769	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2160243	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2160244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192784	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs2192785	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2216012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2904502	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2930118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2930120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3015000	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv899219	chr12:68293419-68353649	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1047675	chr12:68303674-68337325	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68305600-68312400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:68305600-68312400	Weak transcription	HMEC	breast
3	chr12:68305600-68313000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:68305800-68312600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:68307600-68318800	Weak transcription	Fetal Heart	heart
6	chr12:68310000-68317600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:68310400-68312200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:68310400-68313000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:68310400-68313400	Weak transcription	Stomach Mucosa	stomach
10	chr12:68310400-68319000	Weak transcription	Left Ventricle	heart
11	chr12:68310600-68313200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:68310600-68313200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:68310600-68313600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:68310600-68313800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:68310600-68317000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:68310600-68317400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:68310600-68318200	Weak transcription	Fetal Muscle Leg	muscle
18	chr12:68310600-68329800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr12:68310800-68313000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:68310800-68313000	Weak transcription	HSMM	muscle
21	chr12:68310800-68313400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr12:68310800-68313800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr12:68310800-68313800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr12:68310800-68313800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr12:68310800-68313800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr12:68310800-68313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr12:68311000-68313400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr12:68311200-68313600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:68311400-68312400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:68311400-68313000	Enhancers	NHEK	skin
31	chr12:68311400-68314000	Enhancers	NHDF-Ad	bronchial
32	chr12:68311800-68312200	Weak transcription	HSMMtube	muscle
33	chr12:68312000-68313000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:68312000-68317000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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