Variant report
Variant | rs11176961 |
---|---|
Chromosome Location | chr12:40905153-40905154 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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rs_ID | r2[population] |
---|---|
rs11610924 | 0.86[ASN][1000 genomes] |
rs11613807 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11614334 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs12813279 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs12818027 | 0.85[AFR][1000 genomes];0.89[ASN][1000 genomes] |
rs1388783 | 0.89[AFR][1000 genomes];0.83[EUR][1000 genomes] |
rs1492326 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs1492327 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs17467410 | 0.86[ASN][1000 genomes] |
rs36106309 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61913634 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs61913635 | 0.88[ASN][1000 genomes] |
rs61916098 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7300780 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs7310404 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
2 | esv3519672 | chr12:40898422-40907859 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | esv3519673 | chr12:40898984-40905196 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | esv3519675 | chr12:40898984-40905196 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv512268 | chr12:40899000-40905722 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | esv3417437 | chr12:40900070-40907460 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv8970 | chr12:40904094-40951213 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:40894800-40908600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr12:40904600-40905800 | Enhancers | GM12878-XiMat | blood |