Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10784620	0.86[CHB][hapmap]
rs10784621	0.86[CHB][hapmap]
rs10878594	0.86[CHB][hapmap]
rs10878595	0.86[CHB][hapmap]
rs10878597	0.86[CHB][hapmap]
rs11176665	0.86[CHB][hapmap]
rs11176809	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11176961	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11564227	0.86[CHB][hapmap]
rs11610924	0.96[CEU][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs11613807	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11614334	0.85[EUR][1000 genomes]
rs12813279	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12818027	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1346307	0.86[CHB][hapmap]
rs1346308	0.86[CHB][hapmap]
rs1346309	0.86[CHB][hapmap]
rs1463739	0.85[GIH][hapmap];0.87[JPT][hapmap]
rs1492326	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1492327	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17467410	0.82[EUR][1000 genomes]
rs36106309	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61913634	0.82[EUR][1000 genomes]
rs61913635	0.83[EUR][1000 genomes]
rs61916098	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7295553	0.84[CHB][hapmap]
rs7300780	0.87[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7301939	0.86[CHB][hapmap]
rs7310404	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7972395	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3519672	chr12:40898422-40907859	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv983435	chr12:40898783-40903918	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1388783	LRRK2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40894800-40908600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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