Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10083205	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10784705	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10878851	0.93[ASN][1000 genomes]
rs10878852	0.93[ASN][1000 genomes]
rs10878853	0.93[ASN][1000 genomes]
rs10878854	0.93[ASN][1000 genomes]
rs10878859	0.94[ASN][1000 genomes]
rs11177178	0.91[ASN][1000 genomes]
rs11177226	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11177343	0.93[ASN][1000 genomes]
rs11177431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11177433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12049990	0.89[ASN][1000 genomes]
rs1602635	0.87[JPT][hapmap]
rs3751173	0.90[ASN][1000 genomes]
rs4768299	0.89[ASN][1000 genomes]
rs56080664	0.90[ASN][1000 genomes]
rs61913722	0.94[ASN][1000 genomes]
rs61913725	0.89[ASN][1000 genomes]
rs7304371	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.91[ASN][1000 genomes]
rs7955772	0.91[ASN][1000 genomes]
rs7962990	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972739	0.87[JPT][hapmap]
rs7974188	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41001800-41008200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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