Variant report
| Variant | rs7962990 |
|---|---|
| Chromosome Location | chr12:40999409-40999410 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10083205 | 0.90[ASN][1000 genomes] |
| rs10784705 | 0.87[ASN][1000 genomes] |
| rs10878851 | 0.93[ASN][1000 genomes] |
| rs10878852 | 0.93[ASN][1000 genomes] |
| rs10878853 | 0.93[ASN][1000 genomes] |
| rs10878854 | 0.93[ASN][1000 genomes] |
| rs10878859 | 0.94[ASN][1000 genomes] |
| rs11177178 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11177226 | 0.90[ASN][1000 genomes] |
| rs11177343 | 0.93[ASN][1000 genomes] |
| rs11177424 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11177431 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11177433 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12049990 | 0.89[ASN][1000 genomes] |
| rs1492318 | 1.00[YRI][hapmap] |
| rs3751173 | 0.90[ASN][1000 genomes] |
| rs4768299 | 0.89[ASN][1000 genomes] |
| rs56080664 | 0.90[ASN][1000 genomes] |
| rs61913722 | 0.94[ASN][1000 genomes] |
| rs61913725 | 0.89[ASN][1000 genomes] |
| rs7304371 | 0.91[ASN][1000 genomes] |
| rs7955772 | 0.91[ASN][1000 genomes] |
| rs7974188 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv832378 | chr12:40943111-41132305 | Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40998000-40999800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
