Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10219667	1.00[ASN][1000 genomes]
rs10467081	1.00[ASN][1000 genomes]
rs10467178	1.00[ASN][1000 genomes]
rs10784938	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10879341	0.89[AMR][1000 genomes]
rs11178926	1.00[ASN][1000 genomes]
rs11178970	1.00[ASN][1000 genomes]
rs12297752	1.00[ASN][1000 genomes]
rs12299167	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300069	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307310	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12313239	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314887	1.00[ASN][1000 genomes]
rs17128887	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128970	1.00[ASN][1000 genomes]
rs17128983	1.00[ASN][1000 genomes]
rs60183405	1.00[ASN][1000 genomes]
rs60302627	1.00[ASN][1000 genomes]
rs60449393	1.00[ASN][1000 genomes]
rs9652035	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41226800-41266400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:41232000-41248000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:41243800-41245200	Enhancers	Fetal Brain Male	brain
4	chr12:41244800-41245000	Enhancers	Brain Cingulate Gyrus	brain

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