Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10219667	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10467081	1.00[ASN][1000 genomes]
rs10467178	1.00[ASN][1000 genomes]
rs10879341	0.84[AFR][1000 genomes]
rs11178754	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11178907	0.85[AFR][1000 genomes]
rs11178926	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11178970	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297752	1.00[CEU][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299167	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300069	1.00[ASN][1000 genomes]
rs12307310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12313239	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314887	1.00[ASN][1000 genomes]
rs12321296	0.85[AFR][1000 genomes]
rs17128887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128932	0.86[AFR][1000 genomes]
rs17128970	1.00[ASN][1000 genomes]
rs17128983	1.00[ASN][1000 genomes]
rs2218273	0.82[AFR][1000 genomes]
rs59144064	0.85[AFR][1000 genomes]
rs60183405	1.00[ASN][1000 genomes]
rs60302627	1.00[ASN][1000 genomes]
rs60449393	1.00[ASN][1000 genomes]
rs7132869	1.00[GIH][hapmap]
rs9652035	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41285000-41304600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:41288400-41294800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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