Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10784938	0.85[AFR][1000 genomes]
rs12297752	0.82[YRI][hapmap]
rs12307310	0.85[AFR][1000 genomes]
rs12313239	0.83[AFR][1000 genomes]
rs12321296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1442185	0.89[ASN][1000 genomes]
rs17128887	0.87[AFR][1000 genomes]
rs17128906	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17128908	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17128913	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17128925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17128926	0.84[ASN][1000 genomes]
rs17128929	0.84[ASN][1000 genomes]
rs1928560	0.84[ASN][1000 genomes]
rs2218273	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4767993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4768318	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4768320	0.84[ASN][1000 genomes]
rs4768322	0.82[ASN][1000 genomes]
rs4768323	0.82[ASN][1000 genomes]
rs4768324	0.82[ASN][1000 genomes]
rs59144064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9652035	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41276000-41286400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:41282400-41282800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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