Variant report

Variant	rs17128906
Chromosome Location	chr12:41287466-41287467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11178907	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12321296	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372543	0.93[EUR][1000 genomes]
rs1442178	0.93[EUR][1000 genomes]
rs1442181	0.93[EUR][1000 genomes]
rs1442185	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1442194	0.83[EUR][1000 genomes]
rs17128908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128913	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128925	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17128926	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17128929	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17128930	0.93[EUR][1000 genomes]
rs1928560	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2218273	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2304818	0.93[EUR][1000 genomes]
rs4767991	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4767993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768318	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768320	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4768322	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768323	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768324	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768325	0.93[EUR][1000 genomes]
rs59144064	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61153228	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41285000-41304600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:41286800-41288400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:41287000-41288000	Enhancers	A549	lung
4	chr12:41287400-41287600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:41287400-41287800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:41287400-41287800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:41287400-41288000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:41287400-41288200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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