Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11178907	0.82[ASN][1000 genomes]
rs12321296	0.83[ASN][1000 genomes]
rs1372543	0.93[EUR][1000 genomes]
rs1442178	0.93[EUR][1000 genomes]
rs1442181	0.93[EUR][1000 genomes]
rs1442185	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1442194	0.83[EUR][1000 genomes]
rs17128906	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128908	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128913	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs17128926	0.90[EUR][1000 genomes]
rs17128929	0.86[EUR][1000 genomes]
rs17128930	0.93[EUR][1000 genomes]
rs1928560	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2218273	0.83[ASN][1000 genomes]
rs2304818	0.93[EUR][1000 genomes]
rs4767993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs4768318	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4768320	0.90[EUR][1000 genomes]
rs4768322	0.93[EUR][1000 genomes]
rs4768323	0.93[EUR][1000 genomes]
rs4768324	0.93[EUR][1000 genomes]
rs4768325	0.93[EUR][1000 genomes]
rs59144064	0.83[ASN][1000 genomes]
rs932907	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832379	chr12:41054440-41232749	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3435443	chr12:41206734-41222972	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41214000-41223200	Weak transcription	NHEK	skin
2	chr12:41214200-41220200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr12:41214200-41221400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr12:41214200-41221600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:41214400-41220600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:41214400-41221600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:41217400-41221400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr12:41218600-41221400	Weak transcription	Fetal Brain Male	brain
9	chr12:41218800-41219200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:41218800-41219400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:41218800-41219800	Enhancers	A549	lung
12	chr12:41219000-41219600	Enhancers	HMEC	breast

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