Variant report

Variant	rs11180331
Chromosome Location	chr12:41611048-41611049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10506183	1.00[CEU][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10506184	1.00[CEU][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10879842	0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10879844	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10879924	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11180534	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11611769	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11612056	1.00[CEU][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11614877	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12369121	1.00[CEU][hapmap];0.87[YRI][hapmap];0.90[EUR][1000 genomes]
rs17129192	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7311069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41607600-41614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:41607600-41614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:41610600-41612200	Enhancers	Colon Smooth Muscle	Colon
4	chr12:41610800-41611200	Enhancers	Ovary	ovary
5	chr12:41610800-41613200	Enhancers	Rectal Smooth Muscle	rectum
6	chr12:41611000-41611400	Enhancers	Stomach Smooth Muscle	stomach
7	chr12:41611000-41611800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr12:41611000-41611800	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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