Variant report
| Variant | rs11180472 |
|---|---|
| Chromosome Location | chr12:75741583-75741584 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs11366 | 1.00[AMR][1000 genomes] |
| rs55862053 | 1.00[AMR][1000 genomes] |
| rs56198554 | 1.00[AMR][1000 genomes] |
| rs56242432 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57417036 | 1.00[AMR][1000 genomes] |
| rs57936468 | 1.00[AMR][1000 genomes] |
| rs60941260 | 1.00[AMR][1000 genomes] |
| rs7297994 | 0.83[YRI][hapmap] |
| rs7313298 | 1.00[AMR][1000 genomes] |
| rs74108714 | 1.00[AMR][1000 genomes] |
| rs74108721 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74108729 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74108751 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74108752 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74108753 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74108755 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74108756 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74108760 | 1.00[AMR][1000 genomes] |
| rs74108761 | 1.00[AMR][1000 genomes] |
| rs74108762 | 1.00[AMR][1000 genomes] |
| rs74108767 | 1.00[AMR][1000 genomes] |
| rs74108768 | 1.00[AMR][1000 genomes] |
| rs74108773 | 1.00[AMR][1000 genomes] |
| rs74108775 | 1.00[AMR][1000 genomes] |
| rs74108779 | 1.00[AMR][1000 genomes] |
| rs74108787 | 1.00[AMR][1000 genomes] |
| rs74108788 | 1.00[AMR][1000 genomes] |
| rs74108791 | 1.00[AMR][1000 genomes] |
| rs74108803 | 1.00[AMR][1000 genomes] |
| rs74108812 | 1.00[AMR][1000 genomes] |
| rs74108816 | 1.00[AMR][1000 genomes] |
| rs74108826 | 1.00[AMR][1000 genomes] |
| rs74108833 | 1.00[AMR][1000 genomes] |
| rs74108834 | 1.00[AMR][1000 genomes] |
| rs74108836 | 1.00[AMR][1000 genomes] |
| rs74108840 | 1.00[AMR][1000 genomes] |
| rs74108903 | 1.00[AMR][1000 genomes] |
| rs74110939 | 1.00[AMR][1000 genomes] |
| rs74110940 | 1.00[AMR][1000 genomes] |
| rs74110945 | 1.00[AMR][1000 genomes] |
| rs74110966 | 1.00[AMR][1000 genomes] |
| rs74110967 | 1.00[AMR][1000 genomes] |
| rs74111441 | 1.00[AMR][1000 genomes] |
| rs74111442 | 1.00[AMR][1000 genomes] |
| rs7954292 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv492067 | chr12:75415458-76077537 | Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036987 | chr12:75415532-76101559 | Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054059 | chr12:75654631-75776721 | Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv899312 | chr12:75692261-75790817 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 5 | nsv899313 | chr12:75715330-76057811 | Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 6 | nsv520316 | chr12:75740883-75753243 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
