Variant report

Variant	rs11180980
Chromosome Location	chr12:41922056-41922057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10506193	1.00[JPT][hapmap]
rs10880089	1.00[JPT][hapmap]
rs10880091	1.00[JPT][hapmap]
rs10880093	1.00[JPT][hapmap]
rs10880095	1.00[JPT][hapmap]
rs10880096	1.00[JPT][hapmap]
rs11180981	1.00[JPT][hapmap]
rs11180984	1.00[JPT][hapmap]
rs12227680	1.00[JPT][hapmap]
rs12229610	1.00[JPT][hapmap]
rs12230775	1.00[JPT][hapmap]
rs1350431	1.00[JPT][hapmap]
rs1379767	1.00[JPT][hapmap]
rs1458169	1.00[JPT][hapmap]
rs1551594	1.00[JPT][hapmap]
rs1902908	1.00[JPT][hapmap]
rs2054211	1.00[JPT][hapmap]
rs2733272	1.00[JPT][hapmap]
rs2733273	1.00[JPT][hapmap]
rs2733294	1.00[JPT][hapmap]
rs285586	1.00[JPT][hapmap]
rs285587	1.00[JPT][hapmap]
rs3110389	1.00[JPT][hapmap]
rs7974539	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41916000-41927400	Weak transcription	Aorta	Aorta
2	chr12:41916400-41924600	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41916400-41925200	Weak transcription	Brain Anterior Caudate	brain
4	chr12:41921000-41924600	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:41921200-41922400	Enhancers	HSMMtube	muscle
6	chr12:41921400-41922400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:41922000-41922200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:41922000-41922400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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